PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G16860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 154aa    MW: 16876.8 Da    PI: 10.6997
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G16860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.93e-1574134161
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      +ke +r +r+ +NR +A+  R+RKka++ eLe +vkeLe  N++L ++l++l++e + l++
  LPERR06G16860.1  74 DKEHRRLKRLLRNRMSAQQARERKKAYMSELEARVKELERSNSELEERLSTLQNENQMLRQ 134
                      58899***************************************************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-1474138IPR004827Basic-leucine zipper domain
PfamPF001707.6E-1475134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.8476139IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-1378136No hitNo description
Gene3DG3DSA:1.20.5.1704.5E-1778138No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
CDDcd147047.82E-1489130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MIDRSIDAYI GMEESEDEIG RVPEFGLALP GMAPAPSTSG RSVQDAAAAA AGTSSSPAAQ  60
AGSSSRRRGR STADKEHRRL KRLLRNRMSA QQARERKKAY MSELEARVKE LERSNSELEE  120
RLSTLQNENQ MLRQVLKNTT VNRRGPDSSS GGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A1e-1599138342Transcription factor HY5
2oqq_B1e-1599138342Transcription factor HY5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657109.28e-55PREDICTED: transcription factor HY5
SwissprotO246461e-46HY5_ARATH; Transcription factor HY5
TrEMBLA0A0D9WRU51e-106A0A0D9WRU5_9ORYZ; Uncharacterized protein
STRINGBGIOSGA023213-PA2e-54(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.14e-25bZIP family protein